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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
BRCA rs6037404 chr20:2760562 G/C 1.4E-5 1019 22.2 21 14.5 KM Plot
BRCA rs6037406 chr20:2760842 G/C 2.54E-5 1022 22.2 20.77 14.5 KM Plot
BRCA rs60422392 chr18:44621473 T/C 2.08E-5 1024 21.57 22.2 18.13 KM Plot
BRCA rs60484746 chr2:86506783 A/T 2.62E-6 1024 21.97 19.47 12.17 KM Plot
BRCA rs6050351 chr20:25118271 C/T 1.21E-5 1019 22.17 23.07 13.5 KM Plot
BRCA rs6051376 chr20:2754335 G/A 1.14E-5 1018 22.2 20.53 12.5 KM Plot
BRCA rs6051378 chr20:2754402 C/T 1.34E-5 1021 22.18 20.73 12.32 KM Plot
BRCA rs6051381 chr20:2755102 T/G 1.25E-5 1024 22.17 20.73 12.32 KM Plot
BRCA rs6051382 chr20:2760561 T/G 1.4E-5 1019 22.2 21 14.5 KM Plot
BRCA rs6051385 chr20:2760954 T/A 2.54E-5 1022 22.2 20.77 14.5 KM Plot
BRCA rs6051386 chr20:2761010 T/C 2.54E-5 1022 22.2 20.77 14.5 KM Plot
BRCA rs60840060 chr2:86506841 A/G 2.62E-6 1024 21.97 19.47 12.17 KM Plot
BRCA rs6084165 chr20:2754478 G/A 1.12E-5 1019 22.17 20.53 12.32 KM Plot
BRCA rs60854219 chr18:44646664 G/A 2.0E-5 1023 21.63 22.2 18.13 KM Plot
BRCA rs61149145 chr10:27533456 C/T 9.25E-7 1020 21.43 22.17 20.47 KM Plot